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BGI-RIS: An integrated information resource and comparative analysis workbench for rice genomics

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dc.contributor.authorWang, J.
dc.contributor.authorChen, Y.
dc.contributor.authorZhao, H.
dc.contributor.authorDai, M.
dc.contributor.authorZhao, W.
dc.contributor.authorHuang, X.
dc.contributor.authorZhang, Y.
dc.contributor.authorRen. X.
dc.contributor.authorJiao, Y.
dc.contributor.authorWong, G.
dc.contributor.authorWei, S.
dc.contributor.authorNi, P.
dc.contributor.authorYu, J.
dc.contributor.authorZhang, J.
dc.contributor.authorLi, S.
dc.contributor.authorYang, H.
dc.contributor.authorFu, J.
dc.contributor.authorHe, X.
dc.date.accessioned2025-05-01T12:00:21Z
dc.date.available2025-05-01T12:00:21Z
dc.date.issued2004
dc.descriptionRice is a major food staple for the world's population and serves as a model species in cereal genome research. The Beijing Genomics Institute (BGI) has long been devoting itself to sequencing, information analysis and biological research of the rice and other crop genomes. In order to facilitate the application of the rice genomic information and to provide a foundation for functional and evolutionary studies of other important cereal crops, we implemented our Rice Information System (BGIRIS), the most up-to-date integrated information resource as well as a workbench for comparative genomic analysis. In addition to comprehensive data from Oryza sativa L. ssp. indica sequenced by BGI, BGI-RIS also hosts carefully curated genome information from Oryza sativa L. ssp. japonica and EST sequences available from other cereal crops. In this resource, sequence contigs of indica (93-11) have been further assembled into Mbp-sized scaffolds and anchored onto the rice chromosomes referenced to physical/genetic markers, cDNAs and BAC-end sequences. We have annotated the rice genomes for gene content, repetitive elements, gene duplications (tandem and segmental) and single nucleotide polymorphisms between rice subspecies. Designed as a basic platform, BGI-RIS presents the sequenced genomes and related information in systematic and graphical ways for the convenience of in-depth comparative studies (http://rise.genomics.org.cn/).
dc.identifier.doihttps://doi.org/10.7939/R33F4KZ87
dc.language.isoen
dc.relation.isversionofW Zhao, J Wang, X He, X Huang, Y Jiao, M Dai, S Wei, J Fu, Y Chen, X Ren and et al.. "BGI-RIS: An integrated information resource and comparative analysis workbench for rice genomics." Nucleic Acids Research 32 (2004): D377-D382. DOI: 10.1093/nar/gkh085
dc.rights© Oxford University Press 2004; all rights reserved
dc.subjectGenes
dc.subjectPredictions
dc.subjectGrasses
dc.subjectDNA
dc.subjectPlant genomics
dc.subjectJaponica
dc.subjectDraft sequences
dc.subjectDatabases
dc.titleBGI-RIS: An integrated information resource and comparative analysis workbench for rice genomics
dc.typehttp://purl.org/coar/resource_type/c_6501 http://purl.org/coar/version/c_970fb48d4fbd8a85
ual.jupiterAccesshttp://terms.library.ualberta.ca/public

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